bionty.base.Disease

class bionty.base.Disease(organism=None, source=None, version=None, **kwargs)

Bases: PublicOntology

Disease ontologies.

1. Mondo Edits of terms are coordinated and reviewed on: monarch-initiative/mondo

2. Human Disease Ontology Edits of terms are coordinated and reviewed on: DiseaseOntology/HumanDiseaseOntology

3. International Classification of Diseases (ICD) Edits of terms are coordinated and reviewed on: https://www.who.int/standards/classifications/classification-of-diseases

Parameters:

  • organism (Literal['all', 'human'] | None, default: None) – name of Organism entity.

  • source (Literal['mondo', 'doid', 'icd'] | None, default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

  • version (str | None, default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Attributes

property fields: set

All PublicOntology entity fields.

property organism

The name of Organism.

property source

Name of the source.

property version

Version of the source.

Methods