bionty.base.Protein

class bionty.base.Protein(organism=None, source=None, version=None, **kwargs)

Bases: PublicOntology

Protein.

1. Uniprot https://www.uniprot.org/

Parameters:

• organism (Literal['human', 'mouse'] | None, default: None) – name of Organism entity.

• source (Literal['uniprot'] | None, default: None) – The key of the source in the local.yml versions file. Get all available databases with .display_available_sources().

• version (str | None, default: None) – The version of the ontology. Typically a date or an actual version. Get available versions with .display_available_sources().

Attributes

property fields: set

All PublicOntology entity fields.

property organism

The name of Organism.

property source

Name of the source.

property version

Version of the source.

Methods