Index A | B | C | D | E | F | G | I | L | M | N | O | P | R | S | T | U | V A abbr (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) add_source() (bionty.core.BioRecord class method) B BFXPipeline (class in bionty.base) bionty module bionty.base module bionty.core module BioRecord (class in bionty.core) BioSample (class in bionty.base) biotype (bionty.Gene attribute) C CellLine (class in bionty) (class in bionty.base) CellMarker (class in bionty) (class in bionty.base) CellType (class in bionty) (class in bionty.base) created_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) currently_used (bionty.Source attribute) D description (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) DevelopmentalStage (class in bionty) (class in bionty.base) df() (bionty.base.Organism method) (bionty.base.PublicOntology method) diff() (bionty.base.PublicOntology method) Disease (class in bionty) (class in bionty.base) display_available_sources() (in module bionty.base) display_currently_used_sources() (in module bionty.base) Drug (class in bionty.base) E ensembl_gene_id (bionty.Gene attribute) ensembl_gene_ids (bionty.Protein attribute) entity (bionty.Source attribute) Ethnicity (class in bionty) (class in bionty.base) ExperimentalFactor (class in bionty) (class in bionty.base) F fields (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) from_public() (bionty.core.BioRecord class method) from_source() (bionty.core.BioRecord class method) G Gene (class in bionty) (class in bionty.base) gene_symbol (bionty.CellMarker attribute) (bionty.Protein attribute) get_term() (bionty.base.Ontology method) I import_from_source() (bionty.core.BioRecord class method) in_db (bionty.Source attribute) inspect() (bionty.base.PublicOntology method) instrument (bionty.ExperimentalFactor attribute) L length (bionty.Protein attribute) list_source() (bionty.core.BioRecord class method) lookup() (bionty.base.PublicOntology method) M map_legacy_ids() (bionty.base.Gene method) map_synonyms() (bionty.base.PublicOntology method) md5 (bionty.Source attribute) measurement (bionty.ExperimentalFactor attribute) module bionty bionty.base bionty.core molecule (bionty.ExperimentalFactor attribute) N name (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) ncbi_gene_id (bionty.CellMarker attribute) ncbi_gene_ids (bionty.Gene attribute) O Ontology (class in bionty.base) ontology_id (bionty.CellLine attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Tissue attribute) organism (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.Settings property) (bionty.core.StaticReference property) (bionty.Source attribute) Organism (class in bionty) (class in bionty.base) P Pathway (class in bionty) (class in bionty.base) Phenotype (class in bionty) (class in bionty.base) Protein (class in bionty) (class in bionty.base) public() (bionty.core.BioRecord class method) PublicOntology (class in bionty.base) PublicOntologyField (class in bionty.base) R reset_sources() (in module bionty.base) S save() (bionty.core.BioRecord method) scientific_name (bionty.Organism attribute) search() (bionty.base.PublicOntology method) set_as_currently_used() (bionty.Source method) set_latest_sources_as_currently_used() (in module bionty.core) Settings (class in bionty.core) settings (in module bionty) (in module bionty.base) source (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) Source (class in bionty) source_website (bionty.Source attribute) stable_id (bionty.Gene attribute) standardize() (bionty.base.PublicOntology method) StaticReference (class in bionty.core) symbol (bionty.Gene attribute) sync_all_sources_to_latest() (in module bionty.core) synonyms (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Tissue attribute) T Tissue (class in bionty) (class in bionty.base) to_df() (bionty.base.Ontology method) to_pronto() (bionty.base.ExperimentalFactor method) (bionty.base.PublicOntology method) U uid (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) uniprotkb_id (bionty.CellMarker attribute) (bionty.Protein attribute) updated_at (bionty.CellLine attribute) (bionty.CellMarker attribute) (bionty.CellType attribute) (bionty.DevelopmentalStage attribute) (bionty.Disease attribute) (bionty.Ethnicity attribute) (bionty.ExperimentalFactor attribute) (bionty.Gene attribute) (bionty.Organism attribute) (bionty.Pathway attribute) (bionty.Phenotype attribute) (bionty.Protein attribute) (bionty.Source attribute) (bionty.Tissue attribute) url (bionty.Source attribute) V validate() (bionty.base.PublicOntology method) version (bionty.base.BFXPipeline property) (bionty.base.BioSample property) (bionty.base.CellLine property) (bionty.base.CellMarker property) (bionty.base.CellType property) (bionty.base.DevelopmentalStage property) (bionty.base.Disease property) (bionty.base.Drug property) (bionty.base.Ethnicity property) (bionty.base.ExperimentalFactor property) (bionty.base.Gene property) (bionty.base.Organism property) (bionty.base.Pathway property) (bionty.base.Phenotype property) (bionty.base.Protein property) (bionty.base.PublicOntology property) (bionty.base.Tissue property) (bionty.core.StaticReference property) (bionty.Source attribute)